The default GameUserSettings.ini file created during the install did not include all the values that the server needs to see in the file. Therefore, the server would delete the file upon startup, rendering the Network Quality and Autosave Interval startup variables un-set and un-acknowledged. Adding these required values to the default file created upon installation resolves this issue, allowing these settings to be set properly. Existing servers will need to reinstall for this fix to go into effect.